Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1pnx
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain B and nucleic acid chain
A
| Protein |
Nucleic acid |
| 24 (W) |
829 (G) |
Interactions between protein chain C and nucleic acid chain
A
| Protein |
Nucleic acid |
| 2 (G) |
1062 (U) |
| 4 (K) |
1191 (A) |
| 5 (I) |
1190 (G) |
| 156 (R) |
532 (A) |
| 161 (E) |
1055 (A) |
| 163 (A) |
1056 (U) |
| 173 (V) |
1107 (C) |
| 176 (H) |
1108 (G) |
| 176 (H) |
1112 (C) |
| 177 (T) |
1112 (C) |
| 178 (L) |
1112 (C) |
| 192 (T) |
1206 (G) |
| 195 (V) |
1056 (U) |
| 199 (K) |
1059 (C) |
Interactions between protein chain D and nucleic acid chain
A
| Protein |
Nucleic acid |
| 2 (G) |
547 (A) |
| 8 (V) |
430 (A) |
| 9 (C) |
430 (A) |
| 10 (R) |
428 (G) |
| 10 (R) |
542 (G) |
| 13 (R) |
427 (U) |
| 22 (K) |
429 (U) |
| 25 (R) |
410 (G) |
| 25 (R) |
411 (A) |
| 30 (K) |
410 (G) |
| 30 (K) |
411 (A) |
| 36 (R) |
426 (G) |
| 36 (R) |
427 (U) |
| 36 (R) |
428 (G) |
| 36 (R) |
429 (U) |
| 38 (Y) |
426 (G) |
| 41 (G) |
426 (G) |
| 41 (G) |
427 (U) |
| 42 (Q) |
512 (U) |
| 42 (Q) |
541 (G) |
| 43 (H) |
511 (C) |
| 45 (Q) |
425 (G) |
| 46 (K) |
512 (U) |
| 52 (S) |
509 (A) |
| 66 (R) |
544 (G) |
| 73 (R) |
401 (C) |
| 74 (Q) |
402 (G) |
| 113 (S) |
408 (A) |
| 115 (R) |
407 (G) |
| 119 (Q) |
406 (G) |
| 134 (D) |
619 (U) |
| 137 (S) |
620 (C) |
| 141 (R) |
616 (G) |
| 205 (E) |
8 (A) |
| 209 (R) |
508 (C) |
Interactions between protein chain E and nucleic acid chain
A
| Protein |
Nucleic acid |
| 14 (R) |
18 (C) |
| 16 (T) |
16 (A) |
| 16 (T) |
1080 (A) |
| 17 (A) |
16 (A) |
| 17 (A) |
1080 (A) |
| 19 (M) |
921 (U) |
| 20 (Q) |
921 (U) |
| 24 (R) |
15 (G) |
| 25 (R) |
1070 (U) |
| 47 (K) |
1079 (G) |
| 95 (A) |
6 (G) |
| 98 (T) |
6 (G) |
| 120 (T) |
7 (G) |
| 121 (K) |
9 (G) |
| 122 (E) |
9 (G) |
| 126 (R) |
559 (A) |
Interactions between protein chain F and nucleic acid chain
A
| Protein |
Nucleic acid |
| 73 (N) |
738 (C) |
| 90 (V) |
736 (C) |
| 101 (A) |
844 (A) |
Interactions between protein chain G and nucleic acid chain
A
| Protein |
Nucleic acid |
| 3 (R) |
933 (G) |
| 30 (I) |
1240 (U) |
| 33 (D) |
1350 (A) |
| 34 (G) |
1372 (U) |
| 35 (K) |
1241 (G) |
| 35 (K) |
1290 (G) |
| 41 (R) |
1292 (U) |
| 85 (Y) |
693 (G) |
| 94 (R) |
1376 (U) |
| 95 (R) |
939 (G) |
| 98 (S) |
1376 (U) |
| 102 (R) |
940 (C) |
| 109 (N) |
1240 (U) |
| 114 (R) |
1239 (A) |
| 116 (A) |
1240 (U) |
| 119 (R) |
1240 (U) |
| 156 (W) |
1378 (C) |
Interactions between protein chain H and nucleic acid chain
A
| Protein |
Nucleic acid |
| 3 (T) |
878 (G) |
| 8 (D) |
825 (G) |
| 11 (T) |
876 (G) |
| 14 (R) |
875 (C) |
| 15 (N) |
826 (C) |
| 15 (N) |
875 (C) |
| 30 (R) |
590 (C) |
| 30 (R) |
591 (U) |
| 56 (K) |
653 (A) |
| 75 (R) |
860 (A) |
| 92 (R) |
587 (G) |
| 97 (V) |
600 (C) |
| 113 (S) |
642 (A) |
| 115 (S) |
599 (C) |
| 115 (S) |
640 (A) |
| 128 (G) |
600 (C) |
| 130 (G) |
599 (C) |
Interactions between protein chain I and nucleic acid chain
A
| Protein |
Nucleic acid |
| 3 (Q) |
1130 (A) |
| 5 (Y) |
1147 (C) |
| 7 (T) |
1148 (U) |
| 9 (R) |
1118 (C) |
| 10 (R) |
1347 (G) |
| 11 (K) |
1372 (U) |
| 12 (E) |
1251 (A) |
| 12 (E) |
1370 (G) |
| 16 (R) |
1127 (G) |
| 20 (R) |
1130 (A) |
| 38 (Q) |
1291 (G) |
| 62 (Y) |
1129 (C) |
| 66 (R) |
1128 (C) |
| 67 (G) |
1250 (A) |
| 68 (G) |
1250 (A) |
| 70 (K) |
1248 (A) |
| 71 (S) |
1373 (G) |
| 72 (G) |
1372 (U) |
| 93 (R) |
1178 (G) |
| 103 (T) |
1180 (A) |
| 104 (R) |
1117 (G) |
| 110 (E) |
1348 (U) |
| 111 (R) |
1368 (G) |
| 112 (K) |
1367 (C) |
| 112 (K) |
1369 (C) |
| 115 (G) |
1367 (C) |
| 118 (K) |
1350 (A) |
| 120 (R) |
1346 (A) |
| 121 (R) |
1349 (A) |
| 124 (Q) |
943 (U) |
| 124 (Q) |
1232 (U) |
| 124 (Q) |
1233 (G) |
| 125 (Y) |
1342 (C) |
| 126 (S) |
1231 (G) |
| 127 (K) |
1231 (G) |
Interactions between protein chain J and nucleic acid chain
A
| Protein |
Nucleic acid |
| 5 (R) |
1125 (U) |
| 13 (H) |
1153 (C) |
| 35 (S) |
1123 (A) |
| 42 (T) |
1151 (A) |
| 55 (K) |
969 (A) |
| 55 (K) |
973 (G) |
| 56 (H) |
1060 (C) |
| 57 (K) |
972 (C) |
| 59 (S) |
1060 (C) |
| 60 (R) |
1366 (C) |
| 68 (H) |
1152 (A) |
Interactions between protein chain K and nucleic acid chain
A
| Protein |
Nucleic acid |
| 26 (N) |
691 (G) |
| 27 (N) |
689 (C) |
| 39 (P) |
684 (A) |
| 42 (W) |
686 (U) |
| 44 (S) |
689 (C) |
| 46 (G) |
689 (C) |
| 55 (K) |
689 (C) |
| 85 (R) |
708 (C) |
| 114 (V) |
675 (A) |
| 116 (H) |
675 (A) |
| 120 (R) |
778 (G) |
| 123 (K) |
780 (A) |
Interactions between protein chain L and nucleic acid chain
A
| Protein |
Nucleic acid |
| 6 (T) |
880 (C) |
| 8 (N) |
880 (C) |
| 9 (Q) |
881 (G) |
| 12 (R) |
880 (C) |
| 12 (R) |
881 (G) |
| 13 (K) |
882 (C) |
| 15 (R) |
564 (C) |
| 15 (R) |
567 (G) |
| 16 (E) |
562 (C) |
| 21 (K) |
909 (A) |
| 31 (P) |
552 (U) |
| 49 (N) |
529 (G) |
| 50 (S) |
518 (C) |
| 50 (S) |
519 (C) |
| 50 (S) |
529 (G) |
| 52 (L) |
520 (A) |
| 53 (R) |
521 (G) |
| 54 (K) |
521 (G) |
| 61 (T) |
363 (A) |
| 69 (Y) |
522 (C) |
| 72 (G) |
522 (C) |
| 73 (E) |
520 (A) |
| 86 (R) |
552 (U) |
| 87 (G) |
552 (U) |
| 113 (R) |
537 (G) |
| 115 (K) |
538 (G) |
| 115 (K) |
539 (A) |
| 116 (S) |
503 (C) |
| 118 (S) |
35 (G) |
| 118 (S) |
502 (G) |
| 119 (K) |
503 (C) |
| 120 (Y) |
522 (C) |
| 123 (K) |
36 (C) |
| 124 (K) |
37 (U) |
Interactions between protein chain M and nucleic acid chain
A
| Protein |
Nucleic acid |
| 14 (R) |
1295 (G) |
| 30 (A) |
1329 (A) |
| 88 (R) |
1309 (G) |
| 88 (R) |
1310 (G) |
| 91 (R) |
1226 (C) |
| 92 (H) |
1309 (G) |
| 98 (V) |
1308 (U) |
| 99 (R) |
1309 (G) |
| 101 (Q) |
1308 (U) |
| 102 (R) |
950 (U) |
| 103 (T) |
1226 (C) |
| 104 (R) |
952 (U) |
| 104 (R) |
953 (G) |
| 104 (R) |
1228 (C) |
| 105 (T) |
950 (U) |
| 106 (N) |
949 (A) |
| 106 (N) |
950 (U) |
| 108 (R) |
948 (C) |
| 108 (R) |
1228 (C) |
| 109 (T) |
1306 (A) |
| 111 (K) |
1226 (C) |
| 111 (K) |
1228 (C) |
| 115 (K) |
1227 (A) |
| 115 (K) |
1228 (C) |
| 116 (T) |
1228 (C) |
| 116 (T) |
1229 (A) |
| 117 (V) |
1228 (C) |
| 120 (K) |
954 (G) |
| 123 (A) |
953 (G) |
| 125 (R) |
1229 (A) |
| 125 (R) |
1230 (C) |
Interactions between protein chain N and nucleic acid chain
A
| Protein |
Nucleic acid |
| 4 (K) |
1047 (G) |
| 19 (R) |
979 (C) |
| 22 (T) |
1359 (C) |
| 29 (R) |
974 (A) |
| 31 (R) |
974 (A) |
| 31 (R) |
975 (A) |
| 32 (S) |
974 (A) |
| 35 (R) |
1358 (U) |
| 41 (R) |
973 (G) |
| 45 (R) |
1060 (C) |
| 46 (E) |
1202 (G) |
| 58 (K) |
1188 (A) |
| 60 (S) |
1114 (C) |
| 60 (S) |
1187 (G) |
| 61 (W) |
1115 (C) |
| 61 (W) |
1369 (C) |
Interactions between protein chain O and nucleic acid chain
A
| Protein |
Nucleic acid |
| 8 (K) |
658 (G) |
| 8 (K) |
659 (U) |
| 22 (T) |
657 (G) |
| 22 (T) |
750 (G) |
| 23 (G) |
750 (G) |
| 28 (Q) |
656 (C) |
| 35 (R) |
742 (G) |
| 42 (H) |
739 (C) |
| 48 (K) |
669 (U) |
| 48 (K) |
807 (A) |
| 49 (D) |
667 (G) |
| 52 (S) |
740 (U) |
| 52 (S) |
741 (G) |
| 54 (R) |
579 (G) |
| 54 (R) |
728 (A) |
| 65 (R) |
581 (G) |
| 68 (R) |
582 (U) |
| 69 (Y) |
753 (A) |
Interactions between protein chain P and nucleic acid chain
A
| Protein |
Nucleic acid |
| 3 (K) |
378 (G) |
| 5 (R) |
377 (G) |
| 6 (L) |
376 (G) |
| 8 (R) |
391 (G) |
| 12 (K) |
393 (A) |
| 13 (H) |
392 (G) |
| 13 (H) |
393 (A) |
| 17 (Y) |
374 (A) |
| 17 (Y) |
375 (U) |
| 25 (R) |
110 (C) |
| 26 (R) |
311 (C) |
| 27 (K) |
310 (G) |
| 28 (R) |
375 (U) |
| 28 (R) |
390 (C) |
| 35 (K) |
626 (U) |
| 43 (K) |
450 (G) |
| 43 (K) |
452 (A) |
| 67 (T) |
377 (G) |
| 69 (T) |
375 (U) |
| 82 (Q) |
472 (G) |
Interactions between protein chain Q and nucleic acid chain
A
| Protein |
Nucleic acid |
| 2 (P) |
127 (G) |
| 3 (K) |
129 (U) |
| 16 (Q) |
254 (G) |
| 16 (Q) |
273 (A) |
| 17 (K) |
255 (G) |
| 18 (T) |
254 (G) |
| 25 (R) |
238 (G) |
| 39 (S) |
280 (C) |
| 41 (K) |
278 (G) |
| 42 (Y) |
236 (G) |
| 61 (E) |
127 (G) |
| 63 (R) |
130 (A) |
| 64 (P) |
264 (U) |
| 66 (S) |
254 (G) |
| 67 (K) |
253 (U) |
| 69 (K) |
254 (G) |
| 69 (K) |
255 (G) |
| 70 (R) |
234 (C) |
| 94 (N) |
582 (U) |
| 94 (N) |
583 (A) |
| 95 (Y) |
279 (A) |
| 103 (G) |
760 (G) |
| 104 (K) |
761 (G) |
| 105 (A) |
581 (G) |
Interactions between protein chain R and nucleic acid chain
A
| Protein |
Nucleic acid |
| 53 (R) |
834 (C) |
| 64 (R) |
663 (A) |
| 64 (R) |
835 (U) |
Interactions between protein chain S and nucleic acid chain
A
| Protein |
Nucleic acid |
| 4 (S) |
1312 (G) |
| 4 (S) |
1313 (U) |
| 5 (L) |
1314 (C) |
| 6 (K) |
1315 (U) |
| 7 (K) |
1314 (C) |
| 14 (H) |
1014 (A) |
| 36 (R) |
1320 (C) |
| 36 (R) |
1321 (C) |
| 37 (R) |
978 (A) |
| 52 (Y) |
986 (A) |
| 54 (G) |
1220 (G) |
| 55 (K) |
958 (A) |
| 77 (T) |
1221 (G) |
| 78 (R) |
1225 (A) |
| 79 (T) |
956 (U) |
| 80 (Y) |
1226 (C) |
Interactions between protein chain T and nucleic acid chain
A
| Protein |
Nucleic acid |
| 14 (K) |
104 (G) |
| 15 (R) |
107 (G) |
| 16 (H) |
333 (G) |
| 17 (R) |
103 (C) |
| 19 (S) |
322 (C) |
| 22 (R) |
324 (G) |
| 23 (R) |
1436 (U) |
| 26 (N) |
323 (U) |
| 26 (N) |
324 (G) |
| 27 (K) |
1458 (G) |
| 29 (K) |
176 (C) |
| 31 (S) |
1458 (G) |
| 31 (S) |
1459 (C) |
| 38 (K) |
1439 (C) |
| 65 (K) |
178 (C) |
| 68 (K) |
194 (C) |
| 70 (S) |
325 (A) |
| 74 (K) |
132 (C) |
| 79 (R) |
261 (U) |
| 79 (R) |
263 (A) |
| 83 (R) |
260 (G) |
| 85 (M) |
186 (C) |
| 87 (K) |
259 (G) |
| 101 (G) |
191 (G) |
| 102 (G) |
191 (G) |
| 105 (S) |
187 (G) |
| 105 (S) |
188 (C) |
| 105 (S) |
189 (A) |