Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1p4e
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
E
| Protein |
Nucleic acid |
| 62 (T) |
9 (T) |
| 66 (N) |
10 (A) |
| 170 (R) |
2 (A) |
| 170 (R) |
4 (G) |
| 174 (T) |
4 (G) |
| 178 (Y) |
4 (G) |
| 223 (K) |
13 (C) |
| 278 (N) |
6 (T) |
Interactions between protein chain A and nucleic acid chain
H
| Protein |
Nucleic acid |
| 47 (H) |
21 (G) |
| 53 (K) |
22 (A) |
| 56 (T) |
22 (A) |
| 60 (Y) |
21 (G) |
| 82 (K) |
21 (G) |
| 193 (S) |
23 (A) |
| 193 (S) |
24 (T) |
| 223 (K) |
22 (A) |
| 281 (R) |
27 (G) |
| 284 (N) |
25 (A) |
| 299 (K) |
27 (G) |
| 300 (N) |
26 (G) |
| 303 (K) |
25 (A) |
| 304 (S) |
25 (A) |
| 305 (H) |
25 (A) |
Interactions between protein chain A and nucleic acid chain
I
| Protein |
Nucleic acid |
| 331 (S) |
16 (T) |
Interactions between protein chain B and nucleic acid chain
F
| Protein |
Nucleic acid |
| 3 (Q) |
8 (C) |
| 62 (T) |
9 (T) |
| 66 (N) |
10 (A) |
| 170 (R) |
2 (A) |
| 170 (R) |
4 (G) |
| 174 (T) |
4 (G) |
| 178 (Y) |
4 (G) |
| 223 (K) |
13 (C) |
| 278 (N) |
6 (T) |
| 282 (S) |
5 (T) |
| 285 (K) |
4 (G) |
| 285 (K) |
5 (T) |
Interactions between protein chain B and nucleic acid chain
G
| Protein |
Nucleic acid |
| 47 (H) |
21 (G) |
| 53 (K) |
22 (A) |
| 56 (T) |
22 (A) |
| 60 (Y) |
21 (G) |
| 82 (K) |
21 (G) |
| 108 (N) |
20 (A) |
| 193 (S) |
23 (A) |
| 193 (S) |
24 (T) |
| 281 (R) |
27 (G) |
| 284 (N) |
25 (A) |
| 299 (K) |
27 (G) |
| 300 (N) |
26 (G) |
| 303 (K) |
25 (A) |
| 304 (S) |
25 (A) |
| 305 (H) |
25 (A) |
Interactions between protein chain B and nucleic acid chain
J
| Protein |
Nucleic acid |
| 223 (K) |
14 (T) |
| 331 (S) |
15 (T) |
Interactions between protein chain C and nucleic acid chain
G
| Protein |
Nucleic acid |
| 3 (Q) |
8 (C) |
| 62 (T) |
9 (T) |
| 66 (N) |
10 (A) |
| 170 (R) |
2 (A) |
| 170 (R) |
4 (G) |
| 174 (T) |
4 (G) |
| 178 (Y) |
4 (G) |
| 191 (R) |
14 (T) |
| 223 (K) |
13 (C) |
| 223 (K) |
14 (T) |
| 278 (N) |
6 (T) |
| 282 (S) |
5 (T) |
| 285 (K) |
4 (G) |
| 285 (K) |
5 (T) |
| 331 (S) |
15 (T) |
Interactions between protein chain C and nucleic acid chain
I
| Protein |
Nucleic acid |
| 47 (H) |
21 (G) |
| 53 (K) |
22 (A) |
| 56 (T) |
22 (A) |
| 60 (Y) |
21 (G) |
| 82 (K) |
21 (G) |
| 193 (S) |
23 (A) |
| 193 (S) |
24 (T) |
| 281 (R) |
27 (G) |
| 284 (N) |
25 (A) |
| 300 (N) |
26 (G) |
| 303 (K) |
25 (A) |
| 303 (K) |
26 (G) |
| 304 (S) |
25 (A) |
| 305 (H) |
24 (T) |
| 305 (H) |
25 (A) |
Interactions between protein chain D and nucleic acid chain
H
| Protein |
Nucleic acid |
| 3 (Q) |
8 (C) |
| 62 (T) |
9 (T) |
| 66 (N) |
10 (A) |
| 137 (N) |
13 (C) |
| 170 (R) |
4 (G) |
| 174 (T) |
4 (G) |
| 178 (Y) |
4 (G) |
| 223 (K) |
13 (C) |
| 278 (N) |
6 (T) |
| 282 (S) |
5 (T) |
| 285 (K) |
4 (G) |
| 285 (K) |
5 (T) |
| 331 (S) |
15 (T) |
| 340 (R) |
16 (T) |
Interactions between protein chain D and nucleic acid chain
J
| Protein |
Nucleic acid |
| 47 (H) |
21 (G) |
| 53 (K) |
22 (A) |
| 56 (T) |
22 (A) |
| 60 (Y) |
21 (G) |
| 82 (K) |
21 (G) |
| 193 (S) |
23 (A) |
| 193 (S) |
24 (T) |
| 281 (R) |
27 (G) |
| 284 (N) |
25 (A) |
| 303 (K) |
25 (A) |
| 303 (K) |
26 (G) |
| 304 (S) |
25 (A) |
| 305 (H) |
25 (A) |