Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1ouq
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
D
| Protein |
Nucleic acid |
| 47 (S) |
111 (T) |
| 50 (R) |
111 (T) |
| 81 (R) |
112 (A) |
| 84 (A) |
113 (T) |
| 87 (T) |
113 (T) |
| 132 (K) |
114 (A) |
| 159 (R) |
106 (C) |
| 173 (R) |
116 (C) |
| 242 (V) |
105 (A) |
| 257 (S) |
107 (T) |
| 315 (W) |
116 (C) |
| 324 (Y) |
115 (G) |
Interactions between protein chain A and nucleic acid chain
H
| Protein |
Nucleic acid |
| 118 (R) |
123 (T) |
Interactions between protein chain A and nucleic acid chain
X
| Protein |
Nucleic acid |
| 38 (S) |
123 (T) |
| 38 (S) |
124 (A) |
| 41 (T) |
123 (T) |
| 106 (R) |
121 (G) |
| 175 (A) |
125 (T) |
| 259 (R) |
128 (G) |
| 283 (Y) |
127 (C) |
| 288 (G) |
126 (A) |
| 289 (H) |
126 (A) |
Interactions between protein chain B and nucleic acid chain
C
| Protein |
Nucleic acid |
| 50 (R) |
111 (T) |
| 84 (A) |
113 (T) |
| 87 (T) |
113 (T) |
| 132 (K) |
114 (A) |
| 159 (R) |
106 (C) |
| 242 (V) |
105 (A) |
| 242 (V) |
106 (C) |
| 244 (K) |
103 (T) |
| 282 (R) |
112 (A) |
Interactions between protein chain B and nucleic acid chain
D
| Protein |
Nucleic acid |
| 38 (S) |
123 (T) |
| 38 (S) |
124 (A) |
| 41 (T) |
123 (T) |
| 43 (K) |
125 (T) |
| 100 (R) |
122 (T) |
| 101 (R) |
122 (T) |
| 106 (R) |
120 (C) |
| 106 (R) |
121 (A) |
| 121 (R) |
119 (A) |
| 175 (A) |
125 (T) |
| 201 (K) |
123 (T) |
| 244 (K) |
135 (T) |
| 259 (R) |
128 (G) |
| 283 (Y) |
127 (C) |
| 287 (S) |
126 (A) |
| 288 (G) |
126 (A) |
Interactions between protein chain B and nucleic acid chain
X
| Protein |
Nucleic acid |
| 122 (K) |
123 (T) |
| 316 (T) |
117 (G) |
Interactions between protein chain E and nucleic acid chain
D
| Protein |
Nucleic acid |
| 118 (R) |
123 (T) |
Interactions between protein chain E and nucleic acid chain
H
| Protein |
Nucleic acid |
| 47 (S) |
111 (T) |
| 50 (R) |
111 (T) |
| 84 (A) |
113 (T) |
| 87 (T) |
113 (T) |
| 132 (K) |
114 (A) |
| 159 (R) |
106 (C) |
| 242 (V) |
105 (A) |
| 242 (V) |
106 (C) |
| 244 (K) |
103 (T) |
| 257 (S) |
107 (T) |
| 282 (R) |
112 (A) |
| 292 (R) |
116 (C) |
| 324 (Y) |
115 (G) |
Interactions between protein chain E and nucleic acid chain
Y
| Protein |
Nucleic acid |
| 38 (S) |
123 (T) |
| 38 (S) |
124 (A) |
| 41 (T) |
123 (T) |
| 100 (R) |
122 (C) |
| 175 (A) |
125 (T) |
| 244 (K) |
135 (T) |
| 245 (N) |
135 (T) |
| 259 (R) |
128 (G) |
| 276 (K) |
128 (G) |
| 283 (Y) |
127 (C) |
| 288 (G) |
126 (A) |
| 289 (H) |
126 (A) |
Interactions between protein chain F and nucleic acid chain
G
| Protein |
Nucleic acid |
| 47 (S) |
111 (T) |
| 50 (R) |
111 (T) |
| 81 (R) |
112 (A) |
| 84 (A) |
113 (T) |
| 87 (T) |
113 (T) |
| 132 (K) |
114 (A) |
| 159 (R) |
106 (C) |
| 242 (V) |
105 (A) |
| 242 (V) |
106 (C) |
| 244 (K) |
103 (T) |
| 282 (R) |
112 (A) |
Interactions between protein chain F and nucleic acid chain
H
| Protein |
Nucleic acid |
| 38 (S) |
123 (T) |
| 38 (S) |
124 (A) |
| 41 (T) |
123 (T) |
| 90 (Q) |
123 (T) |
| 100 (R) |
122 (T) |
| 101 (R) |
122 (T) |
| 106 (R) |
120 (C) |
| 121 (R) |
119 (A) |
| 175 (A) |
125 (T) |
| 245 (N) |
135 (T) |
| 259 (R) |
128 (G) |
| 276 (K) |
128 (G) |
| 283 (Y) |
127 (C) |
| 287 (S) |
126 (A) |
| 289 (H) |
126 (A) |
Interactions between protein chain F and nucleic acid chain
Y
| Protein |
Nucleic acid |
| 201 (K) |
116 (T) |
| 316 (T) |
117 (G) |