Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1n3e
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
C
| Protein |
Nucleic acid |
| 20 (D) |
414 (C) |
| 48 (K) |
414 (C) |
| 51 (R) |
414 (C) |
Interactions between protein chain A and nucleic acid chain
D
| Protein |
Nucleic acid |
| 22 (S) |
416 (A) |
| 26 (Q) |
418 (G) |
| 28 (K) |
419 (T) |
| 44 (Q) |
416 (A) |
| 70 (R) |
415 (G) |
| 136 (N) |
417 (C) |
| 137 (D) |
416 (A) |
| 138 (S) |
417 (C) |
| 142 (K) |
418 (G) |
| 143 (T) |
418 (G) |
Interactions between protein chain A and nucleic acid chain
E
| Protein |
Nucleic acid |
| 33 (Y) |
453 (A) |
| 34 (K) |
452 (G) |
| 38 (Q) |
454 (A) |
| 68 (R) |
458 (G) |
| 81 (I) |
454 (A) |
| 116 (K) |
453 (A) |
| 139 (K) |
463 (A) |
Interactions between protein chain B and nucleic acid chain
C
| Protein |
Nucleic acid |
| 233 (Y) |
403 (A) |
| 234 (K) |
402 (G) |
| 238 (Q) |
404 (A) |
| 268 (R) |
408 (G) |
| 281 (I) |
404 (A) |
| 339 (K) |
413 (A) |
Interactions between protein chain B and nucleic acid chain
E
| Protein |
Nucleic acid |
| 220 (D) |
464 (C) |
| 248 (K) |
464 (C) |
| 251 (R) |
464 (C) |
Interactions between protein chain B and nucleic acid chain
F
| Protein |
Nucleic acid |
| 222 (S) |
466 (A) |
| 226 (Q) |
468 (G) |
| 228 (K) |
469 (T) |
| 244 (Q) |
466 (A) |
| 270 (R) |
465 (G) |
| 336 (N) |
467 (C) |
| 337 (D) |
466 (A) |
| 338 (S) |
467 (C) |
| 342 (K) |
468 (G) |
| 343 (T) |
468 (G) |
Interactions between protein chain G and nucleic acid chain
I
| Protein |
Nucleic acid |
| 520 (D) |
914 (C) |
| 548 (K) |
914 (C) |
| 551 (R) |
914 (C) |
Interactions between protein chain G and nucleic acid chain
J
| Protein |
Nucleic acid |
| 522 (S) |
916 (A) |
| 526 (Q) |
918 (G) |
| 528 (K) |
919 (T) |
| 544 (Q) |
916 (A) |
| 570 (R) |
915 (G) |
| 636 (N) |
917 (C) |
| 637 (D) |
916 (A) |
| 638 (S) |
917 (C) |
| 642 (K) |
918 (G) |
| 642 (K) |
919 (T) |
| 643 (T) |
918 (G) |
Interactions between protein chain G and nucleic acid chain
K
| Protein |
Nucleic acid |
| 533 (Y) |
953 (A) |
| 534 (K) |
952 (G) |
| 538 (Q) |
954 (A) |
| 568 (R) |
958 (G) |
| 581 (I) |
954 (A) |
| 616 (K) |
953 (A) |
| 639 (K) |
962 (T) |
| 639 (K) |
963 (A) |
Interactions between protein chain H and nucleic acid chain
I
| Protein |
Nucleic acid |
| 733 (Y) |
903 (A) |
| 734 (K) |
902 (G) |
| 738 (Q) |
904 (A) |
| 768 (R) |
908 (G) |
| 781 (I) |
904 (A) |
| 839 (K) |
913 (A) |
Interactions between protein chain H and nucleic acid chain
K
| Protein |
Nucleic acid |
| 720 (D) |
964 (C) |
| 748 (K) |
964 (C) |
| 751 (R) |
964 (C) |
Interactions between protein chain H and nucleic acid chain
L
| Protein |
Nucleic acid |
| 722 (S) |
966 (A) |
| 726 (Q) |
968 (G) |
| 744 (Q) |
966 (A) |
| 770 (R) |
965 (G) |
| 836 (N) |
967 (C) |
| 837 (D) |
966 (A) |
| 838 (S) |
967 (C) |
| 842 (K) |
968 (G) |
| 843 (T) |
968 (G) |