Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1m1a
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
I
| Protein |
Nucleic acid |
| 442 (R) |
69 (C) |
| 442 (R) |
144 (G) |
| 445 (T) |
144 (G) |
| 472 (R) |
51 (A) |
| 484 (F) |
51 (A) |
| 486 (S) |
50 (C) |
| 517 (V) |
71 (G) |
| 518 (T) |
71 (G) |
Interactions between protein chain A and nucleic acid chain
J
| Protein |
Nucleic acid |
| 440 (R) |
228 (A) |
| 441 (Y) |
229 (A) |
| 444 (G) |
227 (G) |
| 444 (G) |
228 (A) |
| 446 (V) |
228 (A) |
| 447 (A) |
228 (A) |
| 464 (K) |
237 (T) |
| 465 (L) |
237 (T) |
| 469 (R) |
236 (T) |
Interactions between protein chain B and nucleic acid chain
I
| Protein |
Nucleic acid |
| 23 (R) |
62 (T) |
| 36 (R) |
61 (A) |
Interactions between protein chain B and nucleic acid chain
J
| Protein |
Nucleic acid |
| 46 (I) |
227 (G) |
| 79 (K) |
247 (C) |
| 80 (T) |
247 (C) |
Interactions between protein chain C and nucleic acid chain
I
| Protein |
Nucleic acid |
| 817 (R) |
31 (G) |
| 820 (R) |
32 (T) |
Interactions between protein chain C and nucleic acid chain
J
| Protein |
Nucleic acid |
| 829 (R) |
267 (G) |
| 829 (R) |
268 (G) |
| 835 (R) |
258 (T) |
| 845 (A) |
257 (A) |
| 876 (T) |
278 (C) |
| 877 (R) |
278 (C) |
Interactions between protein chain D and nucleic acid chain
I
| Protein |
Nucleic acid |
| 1230 (R) |
28 (A) |
| 1253 (S) |
19 (A) |
| 1283 (R) |
41 (A) |
| 1284 (S) |
39 (G) |
| 1285 (T) |
39 (G) |
| 1285 (T) |
40 (G) |
Interactions between protein chain D and nucleic acid chain
J
| Protein |
Nucleic acid |
| 1231 (K) |
268 (G) |
| 1231 (K) |
269 (T) |
| 1233 (S) |
268 (G) |
| 1237 (Y) |
267 (G) |
Interactions between protein chain E and nucleic acid chain
I
| Protein |
Nucleic acid |
| 640 (R) |
83 (A) |
| 640 (R) |
84 (C) |
| 641 (Y) |
6 (T) |
| 641 (Y) |
84 (C) |
| 644 (G) |
82 (A) |
| 644 (G) |
83 (A) |
| 646 (V) |
83 (A) |
| 647 (A) |
83 (A) |
| 656 (K) |
9 (C) |
| 664 (K) |
92 (T) |
| 665 (L) |
92 (T) |
| 669 (R) |
91 (T) |
Interactions between protein chain E and nucleic acid chain
J
| Protein |
Nucleic acid |
| 642 (R) |
214 (G) |
| 642 (R) |
290 (G) |
| 672 (R) |
196 (C) |
| 684 (F) |
196 (C) |
| 717 (V) |
216 (G) |
| 718 (T) |
216 (G) |
Interactions between protein chain F and nucleic acid chain
I
| Protein |
Nucleic acid |
| 246 (I) |
82 (A) |
| 279 (K) |
101 (C) |
| 279 (K) |
102 (A) |
| 280 (T) |
102 (A) |
Interactions between protein chain F and nucleic acid chain
J
| Protein |
Nucleic acid |
| 236 (R) |
206 (C) |
Interactions between protein chain G and nucleic acid chain
I
| Protein |
Nucleic acid |
| 1035 (R) |
113 (A) |
| 1042 (R) |
113 (A) |
| 1043 (V) |
113 (A) |
| 1045 (A) |
112 (T) |
| 1075 (K) |
133 (A) |
| 1077 (R) |
132 (C) |
Interactions between protein chain G and nucleic acid chain
J
| Protein |
Nucleic acid |
| 1015 (K) |
176 (A) |
| 1015 (K) |
177 (G) |
| 1017 (R) |
176 (A) |
| 1020 (R) |
177 (G) |
| 1032 (R) |
175 (A) |
Interactions between protein chain H and nucleic acid chain
I
| Protein |
Nucleic acid |
| 1431 (K) |
124 (A) |
| 1433 (S) |
123 (T) |
| 1437 (Y) |
122 (G) |
Interactions between protein chain H and nucleic acid chain
J
| Protein |
Nucleic acid |
| 1439 (Y) |
166 (T) |
| 1453 (S) |
165 (A) |
| 1483 (R) |
186 (G) |
| 1484 (S) |
185 (G) |
| 1485 (T) |
185 (G) |