Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1kog
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
I
| Protein |
Nucleic acid |
| 249 (K) |
99 (C) |
| 249 (K) |
100 (U) |
| 548 (T) |
84 (U) |
| 575 (N) |
83 (U) |
| 577 (K) |
89 (U) |
| 609 (R) |
87 (U) |
Interactions between protein chain A and nucleic acid chain
J
| Protein |
Nucleic acid |
| 344 (G) |
98 (A) |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 349 (R) |
80 (U) |
| 500 (E) |
79 (A) |
| 502 (N) |
78 (G) |
Interactions between protein chain B and nucleic acid chain
I
| Protein |
Nucleic acid |
| 344 (G) |
98 (A) |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 349 (R) |
79 (A) |
| 349 (R) |
80 (U) |
| 500 (E) |
79 (A) |
| 502 (N) |
78 (G) |
| 504 (R) |
96 (C) |
Interactions between protein chain B and nucleic acid chain
J
| Protein |
Nucleic acid |
| 249 (K) |
99 (C) |
| 249 (K) |
100 (U) |
| 548 (T) |
84 (U) |
| 575 (N) |
83 (U) |
| 577 (K) |
89 (U) |
| 609 (R) |
87 (U) |
Interactions between protein chain C and nucleic acid chain
K
| Protein |
Nucleic acid |
| 249 (K) |
99 (C) |
| 547 (I) |
85 (C) |
| 549 (D) |
84 (U) |
| 575 (N) |
83 (U) |
| 599 (K) |
86 (G) |
| 600 (E) |
86 (G) |
| 609 (R) |
87 (U) |
Interactions between protein chain C and nucleic acid chain
L
| Protein |
Nucleic acid |
| 344 (G) |
98 (A) |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 500 (E) |
79 (A) |
| 502 (N) |
78 (G) |
| 502 (N) |
79 (A) |
Interactions between protein chain D and nucleic acid chain
K
| Protein |
Nucleic acid |
| 342 (N) |
98 (A) |
| 344 (G) |
98 (A) |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 349 (R) |
79 (A) |
| 349 (R) |
80 (U) |
| 500 (E) |
79 (A) |
| 502 (N) |
78 (G) |
| 502 (N) |
95 (A) |
| 504 (R) |
96 (C) |
Interactions between protein chain D and nucleic acid chain
L
| Protein |
Nucleic acid |
| 246 (K) |
101 (G) |
| 249 (K) |
99 (C) |
| 249 (K) |
100 (U) |
| 548 (T) |
84 (U) |
| 575 (N) |
83 (U) |
| 577 (K) |
89 (U) |
| 599 (K) |
86 (G) |
| 609 (R) |
87 (U) |
Interactions between protein chain E and nucleic acid chain
M
| Protein |
Nucleic acid |
| 246 (K) |
101 (G) |
| 249 (K) |
99 (C) |
| 548 (T) |
84 (U) |
| 549 (D) |
84 (U) |
| 599 (K) |
86 (G) |
| 600 (E) |
86 (G) |
| 609 (R) |
87 (U) |
| 609 (R) |
88 (G) |
Interactions between protein chain E and nucleic acid chain
N
| Protein |
Nucleic acid |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 349 (R) |
80 (U) |
| 500 (E) |
79 (A) |
Interactions between protein chain F and nucleic acid chain
M
| Protein |
Nucleic acid |
| 344 (G) |
98 (A) |
| 347 (S) |
79 (A) |
| 348 (Y) |
80 (U) |
| 349 (R) |
80 (U) |
| 500 (E) |
79 (A) |
Interactions between protein chain F and nucleic acid chain
N
| Protein |
Nucleic acid |
| 246 (K) |
100 (U) |
| 246 (K) |
101 (G) |
| 548 (T) |
84 (U) |
| 577 (K) |
89 (U) |
| 599 (K) |
86 (G) |
| 600 (E) |
86 (G) |
Interactions between protein chain G and nucleic acid chain
O
| Protein |
Nucleic acid |
| 246 (K) |
100 (U) |
| 246 (K) |
101 (G) |
| 548 (T) |
84 (U) |
| 549 (D) |
84 (U) |
| 577 (K) |
89 (U) |
| 599 (K) |
86 (G) |
| 600 (E) |
86 (G) |
| 609 (R) |
87 (U) |
| 609 (R) |
88 (G) |
Interactions between protein chain H and nucleic acid chain
P
| Protein |
Nucleic acid |
| 548 (T) |
84 (U) |
| 549 (D) |
84 (U) |
| 577 (K) |
89 (U) |
| 599 (K) |
86 (G) |
| 609 (R) |
87 (U) |
| 609 (R) |
88 (G) |