Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1knz
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
W
| Protein |
Nucleic acid |
| 62 (N) |
3 (G) |
| 69 (T) |
3 (G) |
| 80 (S) |
4 (A) |
| 83 (R) |
4 (A) |
| 84 (N) |
3 (G) |
| 87 (W) |
5 (C) |
| 100 (D) |
5 (C) |
| 100 (D) |
6 (C) |
| 132 (K) |
3 (G) |
| 132 (K) |
4 (A) |
| 133 (S) |
3 (G) |
| 133 (S) |
4 (A) |
| 133 (S) |
5 (C) |
| 134 (S) |
4 (A) |
| 135 (S) |
6 (C) |
Interactions between protein chain B and nucleic acid chain
W
| Protein |
Nucleic acid |
| 98 (D) |
5 (C) |
| 102 (N) |
5 (C) |
| 105 (R) |
5 (C) |
| 105 (R) |
6 (C) |
| 118 (R) |
6 (C) |
| 146 (K) |
6 (C) |
Interactions between protein chain C and nucleic acid chain
X
| Protein |
Nucleic acid |
| 62 (N) |
3 (G) |
| 69 (T) |
3 (G) |
| 80 (S) |
4 (A) |
| 83 (R) |
4 (A) |
| 84 (N) |
3 (G) |
| 87 (W) |
5 (C) |
| 100 (D) |
5 (C) |
| 100 (D) |
6 (C) |
| 132 (K) |
3 (G) |
| 132 (K) |
4 (A) |
| 133 (S) |
3 (G) |
| 133 (S) |
5 (C) |
| 134 (S) |
4 (A) |
| 135 (S) |
6 (C) |
Interactions between protein chain D and nucleic acid chain
X
| Protein |
Nucleic acid |
| 98 (D) |
5 (C) |
| 102 (N) |
5 (C) |
| 105 (R) |
5 (C) |
| 105 (R) |
6 (C) |
| 118 (R) |
6 (C) |
| 146 (K) |
6 (C) |
Interactions between protein chain I and nucleic acid chain
Y
| Protein |
Nucleic acid |
| 62 (N) |
3 (G) |
| 69 (T) |
3 (G) |
| 80 (S) |
4 (A) |
| 83 (R) |
4 (A) |
| 84 (N) |
3 (G) |
| 87 (W) |
5 (C) |
| 100 (D) |
5 (C) |
| 100 (D) |
6 (C) |
| 132 (K) |
3 (G) |
| 132 (K) |
4 (A) |
| 133 (S) |
3 (G) |
| 133 (S) |
4 (A) |
| 133 (S) |
5 (C) |
| 134 (S) |
4 (A) |
| 135 (S) |
6 (C) |
Interactions between protein chain J and nucleic acid chain
Y
| Protein |
Nucleic acid |
| 98 (D) |
5 (C) |
| 102 (N) |
5 (C) |
| 105 (R) |
5 (C) |
| 105 (R) |
6 (C) |
| 118 (R) |
6 (C) |
| 146 (K) |
6 (C) |
Interactions between protein chain M and nucleic acid chain
Z
| Protein |
Nucleic acid |
| 62 (N) |
3 (G) |
| 69 (T) |
3 (G) |
| 80 (S) |
4 (A) |
| 83 (R) |
4 (A) |
| 84 (N) |
3 (G) |
| 87 (W) |
5 (C) |
| 100 (D) |
5 (C) |
| 100 (D) |
6 (C) |
| 132 (K) |
3 (G) |
| 132 (K) |
4 (A) |
| 133 (S) |
3 (G) |
| 133 (S) |
5 (C) |
| 134 (S) |
4 (A) |
| 135 (S) |
6 (C) |
Interactions between protein chain N and nucleic acid chain
Z
| Protein |
Nucleic acid |
| 98 (D) |
5 (C) |
| 102 (N) |
5 (C) |
| 105 (R) |
5 (C) |
| 105 (R) |
6 (C) |
| 118 (R) |
6 (C) |
| 146 (K) |
6 (C) |