Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1k78
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
C
| Protein |
Nucleic acid |
| 29 (N) |
16 (G) |
| 52 (C) |
9 (G) |
| 52 (C) |
10 (A) |
| 56 (R) |
9 (G) |
| 62 (H) |
11 (G) |
| 66 (S) |
11 (G) |
| 85 (G) |
20 (C) |
| 86 (S) |
21 (A) |
| 89 (K) |
23 (T) |
| 90 (V) |
23 (T) |
| 91 (A) |
23 (T) |
| 131 (S) |
24 (G) |
| 133 (S) |
25 (G) |
| 134 (S) |
24 (G) |
| 137 (R) |
23 (T) |
Interactions between protein chain A and nucleic acid chain
D
| Protein |
Nucleic acid |
| 22 (Q) |
17 (A) |
| 22 (Q) |
18 (T) |
| 30 (G) |
13 (G) |
| 33 (L) |
15 (C) |
| 38 (R) |
15 (C) |
| 61 (S) |
16 (C) |
| 71 (R) |
14 (C) |
| 81 (G) |
14 (C) |
| 84 (G) |
12 (A) |
| 85 (G) |
10 (G) |
| 85 (G) |
11 (G) |
| 111 (A) |
2 (A) |
| 136 (N) |
2 (A) |
Interactions between protein chain A and nucleic acid chain
H
| Protein |
Nucleic acid |
| 115 (R) |
27 (C) |
Interactions between protein chain B and nucleic acid chain
C
| Protein |
Nucleic acid |
| 391 (R) |
9 (G) |
| 394 (R) |
8 (G) |
| 397 (Y) |
7 (C) |
| 409 (R) |
5 (G) |
Interactions between protein chain B and nucleic acid chain
D
| Protein |
Nucleic acid |
| 337 (L) |
18 (T) |
| 375 (W) |
19 (C) |
| 379 (K) |
19 (C) |
| 388 (K) |
20 (T) |
| 396 (Y) |
18 (T) |
Interactions between protein chain E and nucleic acid chain
G
| Protein |
Nucleic acid |
| 29 (N) |
16 (G) |
| 50 (R) |
10 (A) |
| 52 (C) |
9 (G) |
| 52 (C) |
10 (A) |
| 56 (R) |
9 (G) |
| 62 (H) |
11 (G) |
| 66 (S) |
11 (G) |
| 85 (G) |
20 (C) |
| 86 (S) |
21 (A) |
| 89 (K) |
23 (T) |
| 90 (V) |
23 (T) |
| 91 (A) |
23 (T) |
| 131 (S) |
24 (G) |
| 133 (S) |
25 (G) |
| 134 (S) |
24 (G) |
Interactions between protein chain E and nucleic acid chain
H
| Protein |
Nucleic acid |
| 22 (Q) |
17 (A) |
| 22 (Q) |
18 (T) |
| 30 (G) |
13 (G) |
| 33 (L) |
15 (C) |
| 38 (R) |
15 (C) |
| 61 (S) |
16 (C) |
| 64 (C) |
15 (C) |
| 81 (G) |
14 (C) |
| 84 (G) |
12 (A) |
| 85 (G) |
10 (G) |
| 111 (A) |
2 (A) |
| 112 (W) |
1 (A) |
Interactions between protein chain F and nucleic acid chain
G
| Protein |
Nucleic acid |
| 391 (R) |
9 (G) |
| 394 (R) |
8 (G) |
| 397 (Y) |
7 (C) |
| 409 (R) |
6 (C) |
Interactions between protein chain F and nucleic acid chain
H
| Protein |
Nucleic acid |
| 337 (L) |
18 (T) |
| 375 (W) |
19 (C) |
| 388 (K) |
20 (T) |
| 396 (Y) |
18 (T) |
Interactions between protein chain I and nucleic acid chain
C
| Protein |
Nucleic acid |
| 85 (G) |
24 (G) |
| 111 (A) |
16 (G) |
| 136 (N) |
16 (G) |
| 140 (R) |
17 (C) |
Interactions between protein chain I and nucleic acid chain
D
| Protein |
Nucleic acid |
| 86 (S) |
7 (A) |
| 89 (K) |
9 (T) |
| 90 (V) |
9 (T) |
| 91 (A) |
9 (T) |
| 131 (S) |
10 (G) |
| 133 (S) |
11 (G) |
| 134 (S) |
10 (G) |
| 137 (R) |
10 (G) |