Graphical representation of interactions between protein and
nucleic acid chains in PDB structure 1id3
Protein chain - blue,
nucleic acid chain - red.
Interactions between protein chain A and nucleic acid chain
I
| Protein |
Nucleic acid |
| 42 (K) |
144 (G) |
| 45 (T) |
144 (G) |
| 72 (R) |
51 (A) |
| 84 (F) |
51 (A) |
| 86 (S) |
50 (C) |
| 117 (V) |
70 (G) |
| 118 (T) |
69 (C) |
| 118 (T) |
70 (G) |
Interactions between protein chain A and nucleic acid chain
J
| Protein |
Nucleic acid |
| 41 (Y) |
230 (C) |
| 44 (G) |
228 (A) |
| 46 (V) |
229 (A) |
| 47 (A) |
229 (A) |
| 63 (R) |
238 (T) |
| 64 (K) |
238 (T) |
| 65 (L) |
238 (T) |
| 69 (R) |
237 (T) |
Interactions between protein chain B and nucleic acid chain
I
| Protein |
Nucleic acid |
| 36 (R) |
60 (C) |
Interactions between protein chain B and nucleic acid chain
J
| Protein |
Nucleic acid |
| 35 (R) |
228 (A) |
| 46 (I) |
228 (A) |
| 79 (K) |
246 (G) |
| 79 (K) |
247 (C) |
| 80 (T) |
247 (C) |
Interactions between protein chain C and nucleic acid chain
I
| Protein |
Nucleic acid |
| 18 (R) |
31 (G) |
| 33 (R) |
30 (A) |
Interactions between protein chain C and nucleic acid chain
J
| Protein |
Nucleic acid |
| 30 (R) |
268 (G) |
| 44 (I) |
258 (T) |
| 46 (S) |
257 (A) |
| 78 (R) |
278 (C) |
Interactions between protein chain D and nucleic acid chain
I
| Protein |
Nucleic acid |
| 36 (R) |
27 (A) |
| 45 (Y) |
20 (T) |
| 91 (T) |
39 (G) |
| 91 (T) |
40 (G) |
Interactions between protein chain E and nucleic acid chain
I
| Protein |
Nucleic acid |
| 39 (H) |
5 (A) |
| 40 (R) |
82 (A) |
| 44 (G) |
81 (G) |
| 44 (G) |
82 (A) |
| 46 (V) |
82 (A) |
| 47 (A) |
82 (A) |
| 64 (K) |
91 (T) |
| 65 (L) |
91 (T) |
| 69 (R) |
90 (T) |
| 83 (R) |
99 (A) |
Interactions between protein chain E and nucleic acid chain
J
| Protein |
Nucleic acid |
| 42 (K) |
290 (G) |
| 45 (T) |
290 (G) |
| 72 (R) |
197 (A) |
| 84 (F) |
197 (A) |
| 86 (S) |
196 (C) |
| 117 (V) |
217 (G) |
| 118 (T) |
216 (G) |
| 118 (T) |
217 (G) |
Interactions between protein chain F and nucleic acid chain
I
| Protein |
Nucleic acid |
| 35 (R) |
81 (G) |
| 46 (I) |
81 (G) |
| 47 (S) |
80 (T) |
| 48 (G) |
80 (T) |
| 79 (K) |
101 (C) |
| 80 (T) |
100 (G) |
| 80 (T) |
101 (C) |
Interactions between protein chain F and nucleic acid chain
J
| Protein |
Nucleic acid |
| 36 (R) |
207 (A) |
Interactions between protein chain G and nucleic acid chain
I
| Protein |
Nucleic acid |
| 43 (R) |
111 (A) |
| 44 (I) |
112 (T) |
| 46 (S) |
111 (A) |
| 77 (T) |
131 (G) |
| 78 (R) |
132 (C) |
Interactions between protein chain G and nucleic acid chain
J
| Protein |
Nucleic acid |
| 18 (R) |
177 (G) |
Interactions between protein chain H and nucleic acid chain
I
| Protein |
Nucleic acid |
| 37 (K) |
122 (G) |
| 42 (S) |
122 (G) |
Interactions between protein chain H and nucleic acid chain
J
| Protein |
Nucleic acid |
| 36 (R) |
175 (A) |
| 45 (Y) |
166 (T) |
| 91 (T) |
186 (G) |