Graphical representation of interactions between protein and nucleic acid chains in PDB structure 1kbu

Protein chain - blue, nucleic acid chain - red.

Interactions between protein chain A and nucleic acid chain D



Protein Nucleic acid
47 (S) 10 (T)
50 (R) 10 (T)
81 (R) 11 (A)
84 (A) 12 (T)
87 (T) 12 (T)
132 (K) 13 (A)
156 (Q) 4 (A)
159 (R) 5 (C)
173 (R) 15 (C)
242 (V) 4 (A)
242 (V) 5 (C)
244 (K) 2 (T)
257 (S) 6 (T)
282 (R) 11 (A)
315 (W) 15 (C)
324 (Y) 14 (G)

Interactions between protein chain B and nucleic acid chain C



Protein Nucleic acid
43 (K) 9 (G)
47 (S) 10 (T)
50 (R) 10 (T)
81 (R) 11 (A)
84 (A) 12 (T)
86 (K) 14 (A)
90 (Q) 13 (A)
132 (K) 13 (A)
156 (Q) 5 (G)
159 (R) 5 (G)
173 (R) 15 (T)
201 (K) 14 (A)
242 (V) 4 (A)
242 (V) 5 (G)
244 (K) 2 (T)
257 (S) 6 (T)
282 (R) 11 (A)
292 (R) 15 (T)
315 (W) 15 (T)
316 (T) 16 (G)
324 (Y) 14 (A)

Interactions between protein chain B and nucleic acid chain D



Protein Nucleic acid
38 (S) 22 (T)
38 (S) 23 (A)
41 (T) 22 (T)
100 (R) 21 (T)
101 (R) 21 (T)
121 (R) 18 (A)
175 (A) 24 (T)
243 (R) 32 (T)
244 (K) 34 (T)
259 (R) 27 (G)
283 (Y) 26 (C)
287 (S) 25 (A)
288 (G) 25 (A)
289 (H) 25 (A)