Graphical representation of interactions between protein and nucleic acid chains in PDB structure 1ibm

Protein chain - blue, nucleic acid chain - red.

Interactions between protein chain B and nucleic acid chain A



Protein Nucleic acid
96 (R) 1101 (A)
99 (G) 1102 (A)
104 (N) 1073 (U)

Interactions between protein chain C and nucleic acid chain A



Protein Nucleic acid
4 (K) 1191 (A)
4 (K) 1192 (C)
5 (I) 1190 (G)
159 (G) 532 (A)
161 (E) 1055 (A)
162 (Q) 1056 (U)
163 (A) 1056 (U)
173 (V) 1107 (C)
176 (H) 1108 (G)
176 (H) 1112 (C)
178 (L) 1112 (C)
195 (V) 1056 (U)
195 (V) 1205 (U)
199 (K) 1059 (C)

Interactions between protein chain D and nucleic acid chain A



Protein Nucleic acid
9 (C) 430 (A)
10 (R) 428 (G)
10 (R) 542 (G)
13 (R) 427 (U)
13 (R) 428 (G)
14 (R) 542 (G)
14 (R) 543 (C)
22 (K) 408 (A)
22 (K) 429 (U)
24 (E) 409 (G)
25 (R) 410 (G)
25 (R) 411 (A)
30 (K) 410 (G)
30 (K) 411 (A)
36 (R) 426 (G)
36 (R) 427 (U)
36 (R) 428 (G)
36 (R) 429 (U)
38 (Y) 426 (G)
41 (G) 427 (U)
42 (Q) 540 (G)
42 (Q) 541 (G)
43 (H) 511 (C)
45 (Q) 425 (G)
52 (S) 509 (A)
59 (R) 544 (G)
62 (Q) 545 (C)
73 (R) 400 (C)
73 (R) 401 (C)
113 (S) 408 (A)
115 (R) 407 (G)
118 (R) 404 (U)
119 (Q) 406 (G)
122 (R) 403 (C)
125 (H) 437 (U)
132 (R) 489 (C)
132 (R) 490 (G)
134 (D) 619 (U)
137 (S) 402 (G)
137 (S) 403 (C)
137 (S) 620 (C)
141 (R) 616 (G)
205 (E) 8 (A)
209 (R) 26 (A)
209 (R) 508 (C)

Interactions between protein chain E and nucleic acid chain A



Protein Nucleic acid
14 (R) 18 (C)
14 (R) 1079 (G)
16 (T) 16 (A)
16 (T) 1080 (A)
17 (A) 16 (A)
17 (A) 1080 (A)
18 (R) 1070 (U)
19 (M) 921 (U)
20 (Q) 922 (G)
24 (R) 1397 (C)
25 (R) 1192 (C)
25 (R) 1193 (G)
47 (K) 1077 (G)
57 (K) 1072 (G)
57 (K) 1073 (U)
61 (Y) 1074 (G)
95 (A) 6 (G)
98 (T) 6 (G)
120 (T) 7 (G)
121 (K) 9 (G)
121 (K) 559 (A)
122 (E) 9 (G)
125 (S) 19 (C)
126 (R) 559 (A)
127 (N) 18 (C)
130 (N) 19 (C)
130 (N) 1078 (U)
133 (Y) 1079 (G)

Interactions between protein chain F and nucleic acid chain A



Protein Nucleic acid
2 (R) 738 (C)
2 (R) 739 (C)
4 (Y) 738 (C)
73 (N) 737 (A)
87 (R) 673 (G)
87 (R) 674 (G)
92 (K) 738 (C)

Interactions between protein chain G and nucleic acid chain A



Protein Nucleic acid
2 (A) 1379 (G)
3 (R) 933 (G)
4 (R) 933 (G)
4 (R) 1092 (A)
10 (R) 1376 (U)
29 (K) 1375 (A)
30 (I) 1240 (U)
33 (D) 1350 (A)
34 (G) 1372 (U)
35 (K) 1241 (G)
35 (K) 1290 (G)
41 (R) 1292 (U)
94 (R) 1377 (A)
95 (R) 938 (A)
95 (R) 939 (G)
98 (S) 1376 (U)
109 (N) 1240 (U)
114 (R) 1239 (A)
114 (R) 1298 (C)
116 (A) 1240 (U)
119 (R) 1240 (U)

Interactions between protein chain H and nucleic acid chain A



Protein Nucleic acid
3 (T) 877 (C)
8 (D) 825 (G)
11 (T) 876 (G)
14 (R) 875 (C)
15 (N) 826 (C)
15 (N) 875 (C)
30 (R) 590 (C)
30 (R) 591 (U)
56 (K) 653 (A)
75 (R) 861 (G)
91 (R) 564 (C)
97 (V) 600 (C)
113 (S) 642 (A)
113 (S) 643 (C)
115 (S) 599 (C)
115 (S) 640 (A)
130 (G) 599 (C)
132 (E) 643 (C)

Interactions between protein chain I and nucleic acid chain A



Protein Nucleic acid
3 (Q) 1130 (A)
5 (Y) 1147 (C)
7 (T) 1148 (U)
9 (R) 1149 (C)
10 (R) 1347 (G)
11 (K) 1373 (G)
16 (R) 1127 (G)
20 (R) 1131 (G)
38 (Q) 1291 (G)
62 (Y) 1129 (C)
67 (G) 1250 (A)
68 (G) 1250 (A)
70 (K) 1248 (A)
71 (S) 1372 (U)
71 (S) 1373 (G)
72 (G) 1372 (U)
83 (R) 1118 (C)
93 (R) 1179 (A)
97 (K) 1178 (G)
104 (R) 1117 (G)
110 (E) 1348 (U)
111 (R) 1187 (G)
112 (K) 1367 (C)
112 (K) 1368 (G)
112 (K) 1369 (C)
113 (K) 1186 (G)
115 (G) 1367 (C)
117 (H) 1233 (G)
118 (K) 1349 (A)
120 (R) 1345 (U)
120 (R) 1346 (A)
121 (R) 1349 (A)
121 (R) 1350 (A)
124 (Q) 1232 (U)
125 (Y) 1343 (G)
128 (R) 968 (A)

Interactions between protein chain J and nucleic acid chain A



Protein Nucleic acid
5 (R) 1125 (U)
9 (R) 1279 (A)
13 (H) 1153 (C)
35 (S) 1123 (A)
42 (T) 1151 (A)
43 (R) 1255 (G)
48 (T) 1367 (C)
51 (R) 1189 (C)
55 (K) 964 (A)
55 (K) 969 (A)
55 (K) 973 (G)
57 (K) 971 (G)
57 (K) 972 (C)
60 (R) 1366 (C)
62 (H) 1367 (C)
68 (H) 1152 (A)

Interactions between protein chain K and nucleic acid chain A



Protein Nucleic acid
26 (N) 691 (G)
26 (N) 692 (U)
27 (N) 690 (G)
31 (T) 706 (A)
37 (G) 707 (C)
39 (P) 684 (A)
40 (I) 685 (G)
42 (W) 686 (U)
44 (S) 688 (G)
44 (S) 689 (C)
46 (G) 689 (C)
53 (S) 694 (A)
53 (S) 695 (A)
55 (K) 690 (G)
85 (R) 707 (C)
85 (R) 708 (C)
114 (V) 675 (A)
116 (H) 675 (A)
117 (N) 716 (A)
117 (N) 718 (G)
119 (C) 778 (G)
120 (R) 778 (G)
123 (K) 780 (A)
123 (K) 1523 (G)

Interactions between protein chain L and nucleic acid chain A



Protein Nucleic acid
6 (T) 880 (C)
8 (N) 880 (C)
9 (Q) 881 (G)
12 (R) 881 (G)
15 (R) 564 (C)
15 (R) 567 (G)
16 (E) 562 (C)
21 (K) 909 (A)
22 (S) 554 (C)
29 (G) 553 (A)
31 (P) 552 (U)
34 (R) 363 (A)
46 (K) 1491 (G)
50 (S) 518 (C)
50 (S) 519 (C)
50 (S) 529 (G)
52 (L) 520 (A)
53 (R) 521 (G)
54 (K) 521 (G)
61 (T) 363 (A)
69 (Y) 522 (C)
72 (G) 522 (C)
73 (E) 520 (A)
86 (R) 552 (U)
87 (G) 552 (U)
92 (D) 523 (A)
97 (R) 910 (C)
97 (R) 911 (U)
113 (R) 537 (G)
114 (K) 538 (G)
115 (K) 538 (G)
115 (K) 539 (A)
116 (S) 503 (C)
117 (R) 36 (C)
117 (R) 501 (C)
118 (S) 35 (G)
118 (S) 502 (G)
119 (K) 503 (C)
124 (K) 36 (C)
124 (K) 37 (U)

Interactions between protein chain M and nucleic acid chain A



Protein Nucleic acid
23 (Y) 1329 (A)
26 (G) 1329 (A)
29 (R) 1329 (A)
44 (R) 1297 (C)
77 (N) 1309 (G)
80 (R) 1310 (G)
88 (R) 1310 (G)
91 (R) 1226 (C)
92 (H) 1309 (G)
98 (V) 1308 (U)
99 (R) 1309 (G)
101 (Q) 1308 (U)
103 (T) 1226 (C)
104 (R) 953 (G)
104 (R) 1228 (C)
105 (T) 950 (U)
106 (N) 949 (A)
108 (R) 948 (C)
108 (R) 1228 (C)
111 (K) 1226 (C)
111 (K) 1228 (C)
114 (R) 947 (G)
115 (K) 1227 (A)
115 (K) 1228 (C)
116 (T) 1229 (A)

Interactions between protein chain N and nucleic acid chain A



Protein Nucleic acid
3 (R) 983 (A)
4 (K) 1048 (G)
11 (K) 994 (A)
19 (R) 979 (C)
19 (R) 1219 (U)
22 (T) 1359 (C)
29 (R) 974 (A)
32 (S) 974 (A)
32 (S) 976 (G)
35 (R) 1358 (U)
41 (R) 974 (A)
45 (R) 1059 (C)
45 (R) 1060 (C)
46 (E) 1202 (G)
58 (K) 1188 (A)
60 (S) 1114 (C)
61 (W) 1115 (C)

Interactions between protein chain O and nucleic acid chain A



Protein Nucleic acid
5 (K) 660 (G)
8 (K) 658 (G)
8 (K) 659 (U)
21 (D) 750 (G)
22 (T) 657 (G)
22 (T) 750 (G)
23 (G) 750 (G)
35 (R) 741 (G)
42 (H) 739 (C)
48 (K) 669 (U)
48 (K) 808 (C)
49 (D) 667 (G)
51 (H) 730 (G)
52 (S) 740 (U)
54 (R) 580 (U)
54 (R) 728 (A)
64 (R) 581 (G)
64 (R) 582 (U)
69 (Y) 752 (G)
69 (Y) 753 (A)
72 (R) 754 (C)

Interactions between protein chain P and nucleic acid chain A



Protein Nucleic acid
3 (K) 377 (G)
5 (R) 377 (G)
6 (L) 376 (G)
9 (F) 624 (C)
12 (K) 44 (G)
13 (H) 392 (G)
13 (H) 393 (A)
17 (Y) 374 (A)
18 (R) 609 (A)
23 (D) 229 (U)
25 (R) 110 (C)
27 (K) 310 (G)
28 (R) 375 (U)
28 (R) 390 (C)
35 (K) 626 (U)
42 (R) 449 (C)
43 (K) 450 (G)
63 (G) 136 (C)
65 (Q) 136 (C)
67 (T) 376 (G)
69 (T) 375 (U)
75 (R) 463 (A)
75 (R) 474 (G)
82 (Q) 463 (A)
83 (E) 463 (A)

Interactions between protein chain Q and nucleic acid chain A



Protein Nucleic acid
3 (K) 128 (G)
12 (S) 276 (G)
16 (Q) 254 (G)
17 (K) 255 (G)
18 (T) 254 (G)
34 (K) 585 (G)
39 (S) 280 (C)
40 (K) 237 (C)
41 (K) 277 (C)
41 (K) 278 (G)
61 (E) 127 (G)
63 (R) 130 (A)
63 (R) 190 (U)
64 (P) 264 (U)
66 (S) 254 (G)
68 (R) 276 (G)
68 (R) 277 (C)
69 (K) 255 (G)
94 (N) 582 (U)
95 (Y) 279 (A)
103 (G) 761 (G)
104 (K) 761 (G)
105 (A) 582 (U)

Interactions between protein chain R and nucleic acid chain A



Protein Nucleic acid
50 (I) 719 (C)
61 (K) 836 (G)
63 (Q) 720 (C)
64 (R) 664 (G)
64 (R) 835 (U)
68 (K) 736 (C)
71 (K) 720 (C)
72 (R) 736 (C)
74 (R) 719 (C)
81 (F) 718 (G)

Interactions between protein chain S and nucleic acid chain A



Protein Nucleic acid
4 (S) 1323 (G)
6 (K) 1315 (U)
36 (R) 1320 (C)
36 (R) 1321 (C)
37 (R) 1221 (G)
52 (Y) 986 (A)
53 (N) 1221 (G)
54 (G) 1220 (G)
55 (K) 986 (A)
77 (T) 1221 (G)
78 (R) 1322 (C)
80 (Y) 1227 (A)
81 (R) 957 (U)
83 (H) 1226 (C)

Interactions between protein chain T and nucleic acid chain A



Protein Nucleic acid
14 (K) 104 (G)
15 (R) 107 (G)
16 (H) 333 (G)
17 (R) 102 (G)
18 (Q) 104 (G)
26 (N) 323 (U)
29 (K) 176 (C)
31 (S) 1459 (C)
34 (K) 1438 (G)
35 (T) 1454 (G)
35 (T) 1455 (G)
38 (K) 1439 (C)
39 (K) 1454 (G)
60 (E) 192 (U)
61 (S) 194 (C)
64 (D) 193 (C)
65 (K) 178 (C)
68 (K) 195 (A)
68 (K) 223 (U)
70 (S) 324 (G)
75 (N) 132 (C)
75 (N) 262 (A)
79 (R) 261 (U)
81 (K) 185 (A)
83 (R) 261 (U)
85 (M) 186 (C)
89 (R) 187 (C)
89 (R) 188 (C)
101 (G) 191 (G)
102 (G) 191 (G)
103 (G) 191 (G)
105 (S) 187 (C)
105 (S) 188 (C)
105 (S) 190 (U)

Interactions between protein chain V and nucleic acid chain A



Protein Nucleic acid
3 (K) 1236 (A)
3 (K) 1352 (C)
4 (G) 1305 (G)
6 (R) 1326 (C)
7 (R) 1329 (A)
10 (R) 1243 (C)
12 (K) 1326 (C)
12 (K) 1327 (C)
14 (W) 1235 (U)
17 (T) 1326 (C)
20 (K) 1267 (C)
20 (K) 1327 (C)
24 (R) 1270 (C)